Member

實驗室成員

Researchers 研究員

黃凱堯 Kai-Yao Huang

助研究員
Assistant Research Fellow 

 
Gene Transcriptional Regulation
RNA-seq Data Analysis
Virus-encoded microRNA
Metagenomics/Metatranscriptomics
Protein Phosphorylation
Protein Signal Transduction
RNA-Splicing Related Proteins

  • Journal Papers : 29
  • Conference Papers : 19
100 博士班
100 博士班

Selected Papers


Kai-Yao Huang
, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee, 2016, "dbPTM 2016: ten-year anniversary of a resource of post-translational modification of proteins" Nucleic Acids Research 2016 Jan. 4, Vol. 44(D1):D435-D446. (SCI, IF:10.162; 14/289 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Shun-Long Weng†, Kai-Yao Huang† († joint first authorship), Julia Tzu-Ya Weng, Fang-Yu Hung, Tzu-Hao Chang and Tzong-Yi Lee*, 2017, “Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes” Briefings in Bioinformatics (accepted), (SCI, IF:9.617; 2/56 in MATHEMATICAL & COMPUTATIONAL BIOLOGY)

Ph.D. Students 博士生

呂承宗 Cheng-Tsung Lu

 博士生 Ph.D. Student
 
Protein Posttranslational-Modification
Protein Signal Transduction
Protein S-nitrosylation

  • Journal Papers : 21
  • Conference Papers : 8
100 博士班
100 博士班

Selected Papers


Cheng-Tsung Lu
†, Tzong-Yi Lee† († joint first authorship), Yu-Ju Chen, and Yi-Ju Chen*, 2014, "An intelligent system for identifying acetylated lysine on histones and non-histone proteins," Journal of Biomedicine and Biotechnology, Vol. 2014, Article ID 528650, 11 pages. (SCI, 2013 IF:2.706; 53/165 in BIOTECHNOLOGY & APPLIED MICROBIOLOGY)

Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee*, Neil Arvin Bretaña, Wen-Chi Chang, Yi-Ju Chen, Yu-Ju Chen and Hsien-Da Huang*, 2013, "dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications," Nucleic Acids Research, 41 (D1):D295-305. (SCI, 2012 IF:8.278; 27/290 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

蘇敏綱 Min-Gang Su

 博士生 Ph.D. Student
 
Protein Posttranslational-Modification
Protein Functions and Structures
Drug Binding Analysis
Bacteria Toxin
Medical Image Analysis

  • Journal Papers : 11
  • Conference Papers : 6
100 博士班
100 博士班

Selected Papers


Min-Gang Su
, Chien-Hsun Huang, Tzong-Yi Lee, Yu-Ju Chen and Hsin-Yi Wu*, 2014, Incorporating amino acids composition and functional domains for identifying bacterial toxin proteins," Journal of Biomedicine and Biotechnology, Vol. 2014, Article ID 972692, 7 pages. (SCI, 2013 IF:2.706; 53/165 in BIOTECHNOLOGY & APPLIED MICROBIOLOGY)

Min-Gang Su, Kai-Yao Huang, Cheng-Tsung Lu, Hui-Ju Kao, Ya-Han Chang and Tzong-Yi Lee*, 2014, "topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins," Nucleic Acids Research, Vol. 42 (D1): D537-D545. (SCI, 2013 IF:8.808; 22/291 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

高慧茹 Hui-Ju Kao

 博士生 Ph.D. Student
 
Protein Posttranslational-Modification
Protein Signal Transduction
Protein O-glycosylation
Mass Spectrometry Data Analysis

  • Journal Papers : 5
  • Conference Papers : 5
103 博士班
103 博士班

Selected Papers


Hui-Ju Kao
†, Chien-Hsun Huang† († joint first authorship), Neil Arvin Bretaña, Cheng-Tsung Lu, Kai-Yao Huang, Shun-Long Weng*, and Tzong-Yi Lee*, 2015, "A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs," BMC Bioinformatics, Vol. 16, Suppl 18, S10. (SCI, 2014 IF:2.576; 11/57 in MATHEMATICAL & COMPUTATIONAL BIOLOGY)

Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee*, 2016, "dbPTM 2016: ten-year anniversary of a resource of post-translational modification of proteins" Nucleic Acids Research 2016 Jan. 4, Vol. 44(D1):D435-D446. (SCI, 2015 IF:9.202; 18/289 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

紀郁祥 Yu-Hsiang Chi

 博士生 Ph.D. Student
 
Gene Transcriptional Regulation
RNA-seq Data Analysis
Metagenomics/Metatranscriptomics

  • Journal Papers : 1
  • Conference Papers : 1 
104 博士班
104 博士班

Selected Papers


Kuei-Fang Lee, Julia Tzu-Ya Weng, Paul Wei-Che Hsu, Yu-Hsiang Chi, Ching-Kai Chen, Ingrid Y Liu, Yi-Cheng Chen, Lawrence Shih-Hsin Wu (2014, Sep). Gene Expression profiling of biological pathway alterations by radiation exposure. BioMed Research International , Article ID 834087. (SCI).

鍾智樺 Jhih-Hua Jhong

 博士生 Ph.D. Student
 
RNA-seq Data Analysis
Metagenomics/Metatranscriptomics

  • Journal Papers : 2
  • Conference Papers : 1 
104 博士班
104 博士班

Selected Papers


Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee*, 2016, "dbPTM 2016: ten-year anniversary of a resource of post-translational modification of proteins" Nucleic Acids Research 2016 Jan. 4, Vol. 44(D1):D435-D446. (SCI, 2015 IF:9.202; 18/289 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Chien-Hsun Huang, Min-Gang Su, Hui-Ju Kao, Jhih-Hua Jhong, Shun-Long Weng and Tzong-Yi Lee*, 2016, "Incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines," BMC Systems Biology, Vol. 10 (Suppl 1):6. (SCI, 2015 IF:2.213; 11/56 in MATHEMATICAL & COMPUTATIONAL BIOLOGY)

Master Students 碩士生

105 碩士班
105 碩士班

黃柏哲 Po-Che Huang

碩士生 Master Student
105 碩士班
105 碩士班

詹鎧維 Kai-Wei Chan

碩士生 Master Student
105 碩士班
105 碩士班

李文琪 Wen-Chi Li

碩士生 Master Student
105 碩士班
105 碩士班

張益祥 Yi-Hsiang Chang

碩士生 Master Student
105 碩士班
105 碩士班

王證瑋 Chen-Wei Wang

碩士生 Master Student

Alumni 畢業生

98 碩士班
98 碩士班

何其偉 Chi-Wei Ho

工程師
98 碩士班
98 碩士班

白立偉 Neil Bretana

攻讀 UNSW 博士班
99 碩士班
99 碩士班

江秋紜 Chiu-Yun Chiang

元智大學資訊工程系 講師
99 碩士班
99 碩士班

鄭字修 Tzu-Hsiu Cheng

工程師
99 碩士班
99 碩士班

邱品丰 Pin-Feng Chiu

圓剛科技 工程師
99 碩士班
99 碩士班

謝宜俽 Yi-Hsiu Hsieh

準備國家考試
100 碩士班
100 碩士班

鄧祐銓 Yu-Chuan Teng

中央研究院 研究助理
100 碩士班
100 碩士班

李政達 Jheng-Da Li

工程師
101 碩士班
101 碩士班

楊孝祥 Hsiao-Hsiang Yang

中央研究院 研究助理
101 碩士班
101 碩士班

張雅涵 Ya-Han Chang

工程師
101 碩士班
101 碩士班

謝允中 Yun-Chung Hsieh

廣達電腦 工程師
102 碩士班
102 碩士班

何品豪 He-Pin Ho

英華達 工程師
102 碩士班
102 碩士班

倪御芳 Yu-Fang Ni

英華達 工程師
102 碩士班
102 碩士班

裴文明 Minh-Van Bui

越南
102 碩士班
102 碩士班

胡氏妝 Trang-Thi Ho

越南
103 碩士班
103 碩士班

菲姬 Fergie Kaunang

印尼
103 碩士班
103 碩士班

莊為勝 Wei-Sheng Chuang

中華精測 工程師
103 碩士班
103 碩士班

鄭光浩 Kuang-Hao Cheng

中強光電 工程師
103 碩士班
103 碩士班

孔令維 Ling-Wei Kung

資訊工業策進會 工程師
103 碩士班
103 碩士班

黃群霖 Chun-Lin Huang

嘉實資訊 工程師
104 碩士班
104 碩士班

朱柏宇 Bo-yu Chu

工程師
104 碩士班
104 碩士班

陳孝諺 Hsaio-Yen Chen

工程師

About BiOmic Laboratory

「計算系統生物學實驗室(Computational Systems Biology Laboratory)」成立於2010年,由 李宗夷 教授 擔任本實驗室之指導教授,本實驗室以培育資訊、生物、統計等跨領域專業人才為宗旨。本實驗室專注於生物資訊與系統生物學相關研究,包含基因調控網路、蛋白質體學與蛋白質轉譯後修飾作用、Metagenomics and Metatranscriptomics、癌症生物標誌與藥物設計、訊息傳遞與代謝路徑等,並結合雲端運算與大數據技術建構高效能及高穩定度之生物資料庫與分析系統。

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